Transcript: ENST00000493615.1 PVRL3-003

Description

poliovirus receptor-related 3 [Source:HGNC Symbol;Acc:17664]

Gene Synonyms

CD113, CDW113, CDw113, DKFZP566B0846, NECTIN-3, PPR3, PRR3, PVRR3, nectin-3

Location

Chromosome 3: 110,791,015-110,912,386 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 52424 variant alleles and maps to 294 oligo probes.

Gene

This transcript is a product of gene ENSG00000177707.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000485303.1	PVRL3-002	3664	549aa	ENSP00000418070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2957	Q9NQS3	NM_015480.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493615.1	PVRL3-003	1876	487aa	ENSP00000420579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58843	Q9NQS3	NM_001243288.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319792.3	PVRL3-001	1549	366aa	ENSP00000321514.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58842	Q9NQS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486596.1	PVRL3-011	732	244aa	ENSP00000417572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000461477.1	PVRL3-005	586	130aa	ENSP00000418327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J795	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491525.1	PVRL3-006	564	17aa	ENSP00000418691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481766.1	PVRL3-009	530	168aa	ENSP00000420479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485506.1	PVRL3-004	314	31aa	ENSP00000419829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5G5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488016.1	PVRL3-007	829	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470618.1	PVRL3-008	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478327.1	PVRL3-010	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,876 bps, Translation length: 487 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQS3

CCDS

This transcript is a member of the Human CCDS set: CCDS58843

Version

ENST00000493615.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354046 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000493615.1 PVRL3-003

Summary