Transcript: ENST00000579128.1 TYMS-006

Description

thymidylate synthetase [Source:HGNC Symbol;Acc:12441]

Gene Synonyms

HST422, HsT422, TMS, TS, Tsase

Location

Chromosome 18: 657,665-669,464 forward strand.

About this transcript

This transcript has 4 exons, is associated with 7959 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000176890.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323274.10	TYMS-001	1662	313aa	ENSP00000315644.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11821	P04818 Q53Y97	NM_001071.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323224.7	TYMS-002	1327	279aa	ENSP00000314727.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P04818	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323250.5	TYMS-003	693	230aa	ENSP00000314902.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P04818	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581920.1	TYMS-005	886	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584122.1	TYMS-004	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579128.1	TYMS-006	925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 925 bps,

Version

ENST00000579128.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441655 (version 1)

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Transcript: ENST00000579128.1 TYMS-006

Summary