Transcript: ENST00000549039.1 CTDSP2-009

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:HGNC Symbol;Acc:17077]

Gene Synonyms

NIF2, OS4, PSR2, SCP2

Location

Chromosome 12: 58,216,966-58,220,185 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 1559 variant alleles and maps to 223 oligo probes.

Gene

This transcript is a product of gene ENSG00000175215.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398073.2	CTDSP2-001	4795	271aa	ENSP00000381148.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41801	F8W184 O14595	NM_005730.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548823.1	CTDSP2-003	1368	98aa	ENSP00000447046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1I1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547701.1	CTDSP2-004	988	119aa	ENSP00000446705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W184	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549039.1	CTDSP2-009	797	125aa	ENSP00000448386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YI29	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550144.1	CTDSP2-006	544	182aa	ENSP00000448299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000551594.1	CTDSP2-007	900	102aa	ENSP00000448951.1	Nonsense mediated decay		F8VYL0	-	-
ENST00000547169.1	CTDSP2-005	1340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552294.1	CTDSP2-008	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 797 bps, Translation length: 125 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000549039.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409357 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000549039.1 CTDSP2-009

Summary