Transcript: ENST00000530745.1 RIN1-004

Description

Ras and Rab interactor 1 [Source:HGNC Symbol;Acc:18749]

Location

Chromosome 11: 66,100,080-66,103,907 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 2 domains and features, is associated with 2532 variant alleles and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSG00000174791.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311320.4	RIN1-001	2693	783aa	ENSP00000310406.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31614	Q13671	NM_004292.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530056.1	RIN1-002	2122	617aa	ENSP00000432798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DW96 E9PNR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424433.2	RIN1-201	2084	605aa	ENSP00000400560.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EM96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530745.1	RIN1-004	1872	80aa	ENSP00000431185.1	Nonsense mediated decay		E9PMB8	-	-
ENST00000534824.1	RIN1-006	1834	73aa	ENSP00000431550.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000524804.1	RIN1-007	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526246.1	RIN1-005	4416	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528006.1	RIN1-008	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 1,872 bps, Translation length: 80 residues

Version

ENST00000530745.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000392984 (version 2)

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Transcript: ENST00000530745.1 RIN1-004

Summary