Transcript: ENST00000525457.1 SYT12-002

Description

synaptotagmin XII [Source:HGNC Symbol;Acc:18381]

Gene Synonyms

SRG1, SYT11, sytXII

Location

Chromosome 11: 66,790,190-66,816,410 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 12592 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000173227.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393946.2	SYT12-001	4534	421aa	ENSP00000377520.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8154	E9PNM5 Q8IV01 Q8NDM9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525457.1	SYT12-002	1678	421aa	ENSP00000431400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8154	E9PNM5 Q8IV01 Q8NDM9	NM_001177880.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527043.1	SYT12-003	1661	421aa	ENSP00000435316.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8154	E9PNM5 Q8IV01 Q8NDM9	NM_177963.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533427.1	SYT12-005	593	98aa	ENSP00000434709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNM5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526281.1	SYT12-007	527	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525149.1	SYT12-006	519	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531392.1	SYT12-004	6028	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,678 bps, Translation length: 421 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IV01

CCDS

This transcript is a member of the Human CCDS set: CCDS8154

Version

ENST00000525457.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393130 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000525457.1 SYT12-002

Summary