Transcript: ENST00000531958.1 CARNS1-004

Description

carnosine synthase 1 [Source:HGNC Symbol;Acc:29268]

Gene Synonyms

ATPGD1, KIAA1394

Location

Chromosome 11: 67,183,149-67,192,708 forward strand.

About this transcript

This transcript has 5 exons, is associated with 5324 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSG00000172508.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000445895.2	CARNS1-202	3971	950aa	ENSP00000389009.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53667	F5H427	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423745.2	CARNS1-201	3967	827aa	ENSP00000401519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44658	A5YM72	NM_001166222.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000307823.3	CARNS1-001	3942	827aa	ENSP00000308268.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44658	A5YM72	NM_020811.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531040.1	CARNS1-002	2968	924aa	ENSP00000431670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK38	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524740.1	CARNS1-007	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529925.1	CARNS1-006	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525907.1	CARNS1-005	368	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531388.1	CARNS1-003	5065	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531958.1	CARNS1-004	2369	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,369 bps,

Version

ENST00000531958.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000395500 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

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Favourite species

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Recent locations

Transcript: ENST00000531958.1 CARNS1-004

Summary