Transcript: ENST00000399002.2 SPTLC3-006

Description

serine palmitoyltransferase, long chain base subunit 3 [Source:HGNC Symbol;Acc:16253]

Gene Synonyms

C20orf38, FLJ11112, LCB2B, LCB3, SPT3, SPTLC2L, dJ718P11, dJ718P11.1, hLCB2b

Location

Chromosome 20: 12,989,642-13,147,411 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 8 domains and features, is associated with 64380 variant alleles and maps to 548 oligo probes.

Gene

This transcript is a product of gene ENSG00000172296.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399002.2	SPTLC3-006	3830	552aa	ENSP00000381968.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13115	B1AKS2 Q8N2H1 Q9NUV7	NM_018327.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378194.4	SPTLC3-201	1615	329aa	ENSP00000367436.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS2 C9JC36	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450297.1	SPTLC3-002	645	215aa	ENSP00000409125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000434210.1	SPTLC3-001	572	139aa	ENSP00000389749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431275.1	SPTLC3-003	453	121aa	ENSP00000409760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476791.1	SPTLC3-005	2480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485952.1	SPTLC3-004	277	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,830 bps, Translation length: 552 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NUV7

CCDS

This transcript is a member of the Human CCDS set: CCDS13115

Version

ENST00000399002.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254544 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000399002.2 SPTLC3-006

Summary