Transcript: ENST00000563219.1 SHCBP1-006

Description

SHC SH2-domain binding protein 1 [Source:HGNC Symbol;Acc:29547]

Gene Synonyms

FLJ22009, PAL

Location

Chromosome 16: 46,629,536-46,637,756 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 3359 variant alleles and maps to 71 oligo probes.

Gene

This transcript is a product of gene ENSG00000171241.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303383.3	SHCBP1-001	3461	672aa	ENSP00000306473.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10720	Q8NEM2	NM_024745.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569702.1	SHCBP1-005	465	155aa	ENSP00000460840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000564272.1	SHCBP1-003	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566016.1	SHCBP1-002	1482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565887.1	SHCBP1-004	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567698.1	SHCBP1-007	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563219.1	SHCBP1-006	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 485 bps,

Version

ENST00000563219.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430582 (version 1)

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Transcript: ENST00000563219.1 SHCBP1-006

Summary