Transcript: ENST00000392359.3 STRA13-002

Description

stimulated by retinoic acid 13 [Source:HGNC Symbol;Acc:11422]

Gene Synonyms

CENP-X, CENPX, D9, FAAP10, MGC14480, MHF2

Location

Chromosome 17: 79,976,579-79,980,794 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 2549 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSG00000169689.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392359.3	STRA13-002	805	81aa	ENSP00000376168.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59303	A8MT69	NM_001271006.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584347.1	STRA13-006	799	131aa	ENSP00000464357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRS1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306704.6	STRA13-001	751	63aa	ENSP00000302951.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32772	A8MT69	NM_144998.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584600.1	STRA13-008	730	75aa	ENSP00000463974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR01	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580435.1	STRA13-003	710	58aa	ENSP00000462015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59302	A8MT69	NM_001271007.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579520.1	STRA13-004	702	66aa	ENSP00000464024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583767.1	STRA13-009	894	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584514.1	STRA13-011	882	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577379.1	STRA13-010	861	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580090.1	STRA13-007	752	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000585091.1	STRA13-005	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 805 bps, Translation length: 81 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A8MT69

CCDS

This transcript is a member of the Human CCDS set: CCDS59303

Version

ENST00000392359.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255174 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000392359.3 STRA13-002

Summary