Transcript: ENST00000519074.1 REEP4-003

Description

receptor accessory protein 4 [Source:HGNC Symbol;Acc:26176]

Gene Synonyms

C8orf20, FLJ22246, FLJ22277, PP432

Location

Chromosome 8: 21,996,420-21,999,281 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 1580 variant alleles and maps to 412 oligo probes.

Gene

This transcript is a product of gene ENSG00000168476.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306306.3	REEP4-001	1710	257aa	ENSP00000303482.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6024	Q9H6H4	NM_025232.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334530.5	REEP4-002	1476	173aa	ENSP00000333889.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9H6H4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518664.1	REEP4-009	996	192aa	ENSP00000428160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJV5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523293.1	REEP4-004	913	251aa	ENSP00000428709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521744.1	REEP4-007	635	55aa	ENSP00000429451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIB5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519074.1	REEP4-003	1212	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519875.1	REEP4-005	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,212 bps,

Version

ENST00000519074.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000375353 (version 2)

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Transcript: ENST00000519074.1 REEP4-003

Summary