Transcript: ENST00000535599.1 VWCE-003

Description

von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:26487]

Gene Synonyms

FLJ32009, URG11, VWC1

Location

Chromosome 11: 61,049,970-61,062,567 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 5339 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSG00000167992.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335613.5	VWCE-001	3640	955aa	ENSP00000334186.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8002	B4DY31 Q96DN2	NM_152718.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535710.1	VWCE-004	1437	420aa	ENSP00000442570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DY31	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301770.6	VWCE-002	3364	219aa	ENSP00000301770.6	Nonsense mediated decay		Q96DN2	-	-
ENST00000535599.1	VWCE-003	883	173aa	ENSP00000441565.1	Nonsense mediated decay		B4DS56	-	-
ENST00000538438.1	VWCE-006	1076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000398808.3	VWCE-005	717	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538579.1	VWCE-007	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 883 bps, Translation length: 173 residues

Version

ENST00000535599.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398815 (version 1)

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Recent locations

Transcript: ENST00000535599.1 VWCE-003

Summary