Transcript: ENST00000569062.1 ABCA3-007

Description

ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:33]

Gene Synonyms

ABC-C, ABC3, EST111653, LBM180, SMDP3

Location

Chromosome 16: 2,331,394-2,333,973 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1291 variant alleles and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSG00000167972.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301732.5	ABCA3-001	6609	1704aa	ENSP00000301732.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10466	Q99758	NM_001089.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382381.3	ABCA3-003	6446	1646aa	ENSP00000371818.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y3H2 Q4LE27	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567910.1	ABCA3-004	1205	209aa	ENSP00000454397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P5P9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563623.1	ABCA3-002	3649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566200.1	ABCA3-006	1232	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569062.1	ABCA3-007	900	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 900 bps,

Version

ENST00000569062.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435442 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

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Transcript: ENST00000569062.1 ABCA3-007

Summary