Transcript: ENST00000301732.5 ABCA3-001

Description

ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:33]

Gene Synonyms

ABC-C, ABC3, EST111653, LBM180, SMDP3

Location

About this transcript

This transcript has 33 exons, is annotated with 34 domains and features, is associated with 34756 variant alleles and maps to 947 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301732.5	ABCA3-001	6609	1704aa	ENSP00000301732.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10466	Q99758	NM_001089.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382381.3	ABCA3-003	6446	1646aa	ENSP00000371818.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y3H2 Q4LE27	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567910.1	ABCA3-004	1205	209aa	ENSP00000454397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P5P9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563623.1	ABCA3-002	3649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566200.1	ABCA3-006	1232	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569062.1	ABCA3-007	900	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 33, Coding exons: 30, Transcript length: 6,609 bps, Translation length: 1,704 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99758

CCDS

This transcript is a member of the Human CCDS set: CCDS10466

Version

ENST00000301732.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250784 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.