Transcript: ENST00000372838.4 CERCAM-002

Description

cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]

Gene Synonyms

CEECAM1, CerCAM, GLT25D3, KIAA1502

Location

Chromosome 9: 131,182,759-131,199,626 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 8 domains and features, is associated with 8372 variant alleles and maps to 647 oligo probes.

Gene

This transcript is a product of gene ENSG00000167123.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372838.4	CERCAM-002	2685	595aa	ENSP00000361929.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6901	B7ZBS8 B7ZBS9 B7ZBT0 Q5T4B2	NM_016174.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372842.1	CERCAM-005	5197	517aa	ENSP00000361933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69675	B7ZBS8 B7ZBS9 B7ZBT0 Q5T4B2	NM_001286760.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411852.1	CERCAM-011	1176	79aa	ENSP00000403766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBS8 B7ZBS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420512.1	CERCAM-001	887	218aa	ENSP00000416676.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBS8 B7ZBS9 B7ZBT0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420034.1	CERCAM-009	551	64aa	ENSP00000402508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBS8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447915.1	CERCAM-010	530	109aa	ENSP00000402928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBS8 B7ZBS9 B7ZBT0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493788.1	CERCAM-003	901	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483893.1	CERCAM-013	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487001.2	CERCAM-004	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472858.1	CERCAM-014	338	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463535.1	CERCAM-006	1205	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483737.1	CERCAM-012	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,685 bps, Translation length: 595 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T4B2

CCDS

This transcript is a member of the Human CCDS set: CCDS6901

Version

ENST00000372838.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054435 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000372838.4 CERCAM-002

Summary