Transcript: ENST00000497634.2 FREM1-004

Description

FRAS1 related extracellular matrix 1 [Source:HGNC Symbol;Acc:23399]

Gene Synonyms

BNAR, C9orf143, C9orf145, C9orf154, DKFZp686M16108, FLJ25461, MOTA, TILRR, TRIGNO2

Location

Chromosome 9: 14,784,270-14,792,882 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 4806 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000164946.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422223.2	FREM1-202	10086	2179aa	ENSP00000412940.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47952	Q5H8C1	NM_144966.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380881.4	FREM1-201	10089	2180aa	ENSP00000370263.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JT55	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380880.3	FREM1-001	7324	2179aa	ENSP00000370262.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47952	Q5H8C1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380894.1	FREM1-002	2481	715aa	ENSP00000370278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55293	Q5H8C1	NM_001177704.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380875.3	FREM1-005	6126	1335aa	ENSP00000370257.3	Nonsense mediated decay		F8WE85	-	-
ENST00000427623.1	FREM1-006	1421	222aa	ENSP00000412597.1	Nonsense mediated decay		Q5H8C1	-	-
ENST00000486223.1	FREM1-010	815	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466679.1	FREM1-007	741	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485068.1	FREM1-009	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497634.2	FREM1-004	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 701 bps,

Version

ENST00000497634.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051750 (version 1)

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Transcript: ENST00000497634.2 FREM1-004

Summary