Transcript: ENST00000392270.3 RAET1E-004

Description

retinoic acid early transcript 1E [Source:HGNC Symbol;Acc:16793]

Gene Synonyms

LETAL, N2DL-4, N2DL4, NKG2DL4, RAET1E2, RL-4, ULBP4, bA350J20.7

Location

Chromosome 6: 150,209,608-150,212,068 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 1314 variant alleles and maps to 208 oligo probes.

Gene

This transcript is a product of gene ENSG00000164520.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357183.4	RAET1E-002	958	263aa	ENSP00000349709.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5221	E9PKJ6 I2GUA6 Q8TD07	NM_139165.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532335.1	RAET1E-003	2099	212aa	ENSP00000437067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59043	E9PKJ6 I2GUA6 Q8TD07	NM_001243328.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529948.1	RAET1E-005	875	209aa	ENSP00000432366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59042	E9PKJ6 I2GUA6 Q8TD07	NM_001243327.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367363.3	RAET1E-001	817	227aa	ENSP00000356332.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59044	Q8TD07	NM_001243325.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531073.1	RAET1E-006	643	80aa	ENSP00000433489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKJ6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392270.3	RAET1E-004	743	117aa	ENSP00000376096.3	Nonsense mediated decay		E9PKJ6 Q3T1D4	-	-
ENST00000524905.1	RAET1E-007	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 743 bps, Translation length: 117 residues

Version

ENST00000392270.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000384022 (version 1)

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Transcript: ENST00000392270.3 RAET1E-004

Summary