Transcript: ENST00000313708.6 EBF1-001

Description

early B-cell factor 1 [Source:HGNC Symbol;Acc:3126]

Gene Synonyms

COE1, EBF, O/E-1, OLF1

Location

Chromosome 5: 158,122,928-158,526,769 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 8 domains and features, is associated with 171053 variant alleles and maps to 685 oligo probes.

Gene

This transcript is a product of gene ENSG00000164330.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313708.6	EBF1-001	5250	591aa	ENSP00000322898.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4343	Q9UH73	NM_024007.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380654.4	EBF1-002	2345	560aa	ENSP00000370029.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UH73	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517373.1	EBF1-006	2277	523aa	ENSP00000428020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518836.1	EBF1-010	5127	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523464.1	EBF1-008	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518323.1	EBF1-007	602	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523315.1	EBF1-004	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519739.1	EBF1-009	4735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519890.1	EBF1-005	4695	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522192.1	EBF1-003	1911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 5,250 bps, Translation length: 591 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UH73

CCDS

This transcript is a member of the Human CCDS set: CCDS4343

Version

ENST00000313708.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252649 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000313708.6 EBF1-001

Summary