Transcript: ENST00000502755.1 PRDM9-003

Description

PR domain containing 9 [Source:HGNC Symbol;Acc:13994]

Gene Synonyms

MEISETZ, MSBP3, PFM6, PRMD9, ZNF899

Location

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 1583 variant alleles and maps to 125 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296682.3	PRDM9-001	3691	894aa	ENSP00000296682.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43307	D2E453 D2KI85 D6RD68 Q9NQV7	NM_020227.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502755.1	PRDM9-003	558	100aa	ENSP00000425471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RD68	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 558 bps, Translation length: 100 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000502755.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366377 (version 1)