Transcript: ENST00000480381.1 RYK-002

Description

receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:10481]

Gene Synonyms

D3S3195, JTK5, JTK5A, RYK1

Location

Chromosome 3: 133,901,846-133,914,183 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5136 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSG00000163785.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000296084.4	RYK-201	2846	608aa	ENSP00000296084.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5H8L5 P34925 Q8WTZ8	NM_002958.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427044.2	RYK-202	2887	418aa	ENSP00000399527.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5H8L5 Q8WTZ8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460933.1	RYK-001	2783	587aa	ENSP00000419122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472234.1	RYK-007	470	156aa	ENSP00000475203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3KPT6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000486725.1	RYK-004	586	93aa	ENSP00000417836.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484106.1	RYK-008	823	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000473208.1	RYK-006	5270	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000481382.1	RYK-003	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000480381.1	RYK-002	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000464879.1	RYK-005	392	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 541 bps,

Version

ENST00000480381.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357159 (version 1)

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Transcript: ENST00000480381.1 RYK-002

Summary