Transcript: ENST00000295491.4 MRPS18C-001

Description

mitochondrial ribosomal protein S18C [Source:HGNC Symbol;Acc:16633]

Gene Synonyms

CGI-134, FLJ11146, FLJ22967, MRP-S18-1, MRPS18-1

Location

Chromosome 4: 84,377,118-84,383,451 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 2895 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000163319.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295491.4	MRPS18C-001	1643	142aa	ENSP00000295491.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3604	Q9Y3D5	NM_016067.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509970.1	MRPS18C-010	855	113aa	ENSP00000427014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507019.1	MRPS18C-003	666	114aa	ENSP00000427169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCM2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505719.1	MRPS18C-005	490	92aa	ENSP00000425268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9W2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507349.1	MRPS18C-006	350	68aa	ENSP00000426930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE70	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509571.1	MRPS18C-009	442	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512375.1	MRPS18C-002	2482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505525.1	MRPS18C-007	442	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514581.1	MRPS18C-004	301	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,643 bps, Translation length: 142 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3D5

CCDS

This transcript is a member of the Human CCDS set: CCDS3604

Version

ENST00000295491.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252820 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000295491.4 MRPS18C-001

Summary