Transcript: ENST00000542467.1 TPCN2-003

Description

two pore segment channel 2 [Source:HGNC Symbol;Acc:20820]

Gene Synonyms

SHEP10, TPC2

Location

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 21441 variant alleles and maps to 490 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294309.3	TPCN2-001	2931	752aa	ENSP00000294309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8189	Q8NHX9	NM_139075.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542467.1	TPCN2-003	2000	570aa	ENSP00000445551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETX0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442692.2	TPCN2-005	4376	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534832.1	TPCN2-006	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535009.1	TPCN2-004	2175	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,000 bps, Translation length: 570 residues

Version

ENST00000542467.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000396881 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.