Transcript: ENST00000316461.4 TTC9C-001

Description

tetratricopeptide repeat domain 9C [Source:HGNC Symbol;Acc:28432]

Gene Synonyms

MGC29649

Location

Chromosome 11: 62,496,011-62,506,108 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 5447 variant alleles and maps to 282 oligo probes.

Gene

This transcript is a product of gene ENSG00000162222.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316461.4	TTC9C-001	1080	171aa	ENSP00000325266.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8033	E9PKV8 H0YDR3 Q8N5M4	NM_173810.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513247.2	TTC9C-201	1809	215aa	ENSP00000444031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EST3 Q8WYY7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532583.1	TTC9C-002	858	171aa	ENSP00000434340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8033	E9PKV8 H0YDR3 Q8N5M4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530625.1	TTC9C-004	606	140aa	ENSP00000435282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000294161.6	TTC9C-003	1833	82aa	ENSP00000294161.6	Nonsense mediated decay		E7EST3	-	-
ENST00000532276.1	TTC9C-005	627	69aa	ENSP00000434137.1	Nonsense mediated decay		H0YDR3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000601045.1	TTC9C-006	346	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,080 bps, Translation length: 171 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N5M4

CCDS

This transcript is a member of the Human CCDS set: CCDS8033

Version

ENST00000316461.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000395338 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000316461.4 TTC9C-001

Summary