Transcript: ENST00000301295.6 NLRP4-001

Description

NLR family, pyrin domain containing 4 [Source:HGNC Symbol;Acc:22943]

Gene Synonyms

CLR19.5, CT58, FLJ32126, NALP4, PAN2, PYPAF4, RNH2

Location

Chromosome 19: 56,347,944-56,393,216 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 29 domains and features, is associated with 25959 variant alleles and maps to 429 oligo probes.

Gene

This transcript is a product of gene ENSG00000160505.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301295.6	NLRP4-001	3670	994aa	ENSP00000301295.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12936	K7ES09 Q96MN2	NM_134444.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000346986.5	NLRP4-201	3504	938aa	ENSP00000344787.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J9JIE2 K7ES09	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587891.1	NLRP4-002	3201	919aa	ENSP00000465463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96MN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589437.1	NLRP4-003	1781	504aa	ENSP00000468754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587464.1	NLRP4-004	572	155aa	ENSP00000468496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES09	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,670 bps, Translation length: 994 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MN2

CCDS

This transcript is a member of the Human CCDS set: CCDS12936

Version

ENST00000301295.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000457367 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000301295.6 NLRP4-001

Summary