Transcript: ENST00000518857.1 ATP6V1C1-002

Description

ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 [Source:HGNC Symbol;Acc:856]

Gene Synonyms

ATP6C, ATP6D, VATC, Vma5

Location

Chromosome 8: 104,033,291-104,081,407 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 19964 variant alleles and maps to 531 oligo probes.

Gene

This transcript is a product of gene ENSG00000155097.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395862.3	ATP6V1C1-001	5612	382aa	ENSP00000379203.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6296	E7EV59 P21283	NM_001695.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518738.1	ATP6V1C1-004	2130	382aa	ENSP00000430282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6296	E7EV59 P21283	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518857.1	ATP6V1C1-002	1501	307aa	ENSP00000428204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV59	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521514.1	ATP6V1C1-003	1484	307aa	ENSP00000430129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV59	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518959.1	ATP6V1C1-006	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521671.1	ATP6V1C1-005	517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,501 bps, Translation length: 307 residues

Version

ENST00000518857.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000380100 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000518857.1 ATP6V1C1-002

Summary