Transcript: ENST00000590645.1 ABCA6-002

Description

ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:36]

Gene Synonyms

EST155051

Location

Chromosome 17: 67,131,371-67,138,029 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 2926 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000154262.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284425.2	ABCA6-001	5300	1617aa	ENSP00000284425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11683	Q8N139	NM_080284.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590645.1	ABCA6-002	1511	185aa	ENSP00000466862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N139	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446604.2	ABCA6-005	2176	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592493.1	ABCA6-006	405	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590311.1	ABCA6-004	8186	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589803.1	ABCA6-003	1706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589482.1	ABCA6-007	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,511 bps, Translation length: 185 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N139

Version

ENST00000590645.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450469 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000590645.1 ABCA6-002

Summary