Transcript: ENST00000578063.1 PRKCA-001

Description

protein kinase C, alpha [Source:HGNC Symbol;Acc:9393]

Gene Synonyms

AAG6, PKC-alpha, PKCA, PRKACA

Location

About this transcript

This transcript has 10 exons, is annotated with 26 domains and features, is associated with 167322 variant alleles and maps to 210 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000413366.3	PRKCA-002	8751	672aa	ENSP00000408695.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11664	L7RSM7 P17252	NM_002737.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000284384.6	PRKCA-003	2718	150aa	ENSP00000284384.6	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578063.1	PRKCA-001	1733	308aa	ENSP00000462087.1	Nonsense mediated decay		J3KRN5 Q7Z727	-	-
ENST00000583361.1	PRKCA-005	519	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583775.1	PRKCA-004	321	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,733 bps, Translation length: 308 residues

Version

ENST00000578063.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446950 (version 2)