Transcript: ENST00000468647.1 FRMD1-003

Description

FERM domain containing 1 [Source:HGNC Symbol;Acc:21240]

Gene Synonyms

DKFZp434O0117, FLJ00181, FLJ22615, FLJ40260, bA164L23.1

Location

Chromosome 6: 168,456,485-168,482,209 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 6 domains and features, is associated with 14089 variant alleles and maps to 591 oligo probes.

Gene

This transcript is a product of gene ENSG00000153303.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283309.6	FRMD1-004	3067	549aa	ENSP00000283309.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5306	F5GXR0 Q8N878	NM_024919.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440994.2	FRMD1-005	2857	481aa	ENSP00000414115.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47518	F5GXR0 Q8N878	NM_001122841.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537786.1	FRMD1-201	1649	320aa	ENSP00000440078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511714.1	FRMD1-008	608	196aa	ENSP00000424439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468647.1	FRMD1-003	3821	180aa	ENSP00000427668.1	Nonsense mediated decay		H0Y9A3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000509157.1	FRMD1-007	2108	180aa	ENSP00000423552.1	Nonsense mediated decay		H0Y9A3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432403.1	FRMD1-002	2650	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000358587.1	FRMD1-001	4677	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000336070.7	FRMD1-006	1600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506415.1	FRMD1-009	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 5, Transcript length: 3,821 bps, Translation length: 180 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000468647.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000100318 (version 4)

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Transcript: ENST00000468647.1 FRMD1-003

Summary