Transcript: ENST00000476121.1 GGPS1-004

Description

geranylgeranyl diphosphate synthase 1 [Source:HGNC Symbol;Acc:4249]

Gene Synonyms

GGPPS, GGPPS1

Location

Chromosome 1: 235,492,331-235,506,380 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 6643 variant alleles and maps to 449 oligo probes.

Gene

This transcript is a product of gene ENSG00000152904.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282841.5	GGPS1-001	2895	300aa	ENSP00000282841.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1604	A8MVQ8 C9J6G3 C9J7M1 O95749	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358966.2	GGPS1-201	2740	300aa	ENSP00000351852.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1604	A8MVQ8 C9J6G3 C9J7M1 O95749	NM_001037277.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476121.1	GGPS1-004	2703	300aa	ENSP00000420183.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1604	A8MVQ8 C9J6G3 C9J7M1 O95749	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391855.2	GGPS1-002	1407	246aa	ENSP00000375728.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MVQ8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488594.1	GGPS1-003	1396	300aa	ENSP00000418690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1604	A8MVQ8 C9J6G3 C9J7M1 O95749	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497327.1	GGPS1-008	868	230aa	ENSP00000417865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471812.1	GGPS1-005	850	242aa	ENSP00000417772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6G3 C9J7M1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489692.1	GGPS1-006	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482013.1	GGPS1-007	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,703 bps, Translation length: 300 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95749

CCDS

This transcript is a member of the Human CCDS set: CCDS1604

Version

ENST00000476121.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356798 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000476121.1 GGPS1-004

Summary