Transcript: ENST00000510689.1 SPOCK1-004

Description

sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 [Source:HGNC Symbol;Acc:11251]

Gene Synonyms

SPOCK, TESTICAN, TIC1, TICN1, testican-1

Location

Chromosome 5: 136,328,243-136,834,988 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 206139 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSG00000152377.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394945.1	SPOCK1-001	4846	439aa	ENSP00000378401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4191	D3DQB3 D6RAM7 D6RB21 Q08629	NM_004598.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282223.7	SPOCK1-201	1361	439aa	ENSP00000282223.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4191	D3DQB3 D6RAM7 D6RB21 Q08629	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510689.1	SPOCK1-004	571	67aa	ENSP00000421677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505690.1	SPOCK1-003	453	139aa	ENSP00000424517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510405.1	SPOCK1-006	399	13aa	ENSP00000421418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509978.1	SPOCK1-008	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509293.1	SPOCK1-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508642.1	SPOCK1-007	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503916.1	SPOCK1-002	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515091.1	SPOCK1-009	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 571 bps, Translation length: 67 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000510689.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373463 (version 1)

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Transcript: ENST00000510689.1 SPOCK1-004

Summary