Transcript: ENST00000278671.5 LAMTOR1-001

Description

late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Gene Synonyms

C11orf59, FLJ20625, PDRO, Pdro, Ragulator1, p18, p27RF-Rho

Location

Chromosome 11: 71,808,338-71,814,433 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 2832 variant alleles and maps to 281 oligo probes.

Gene

This transcript is a product of gene ENSG00000149357.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278671.5	LAMTOR1-001	1179	161aa	ENSP00000278671.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8209	B4DUK2 Q6IAA8	NM_017907.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538404.1	LAMTOR1-004	1346	160aa	ENSP00000439011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3Y3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545249.1	LAMTOR1-006	965	142aa	ENSP00000440738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX19	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544594.1	LAMTOR1-003	849	79aa	ENSP00000438717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535107.1	LAMTOR1-008	619	99aa	ENSP00000445170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H479	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535872.1	LAMTOR1-002	899	76aa	ENSP00000439482.1	Nonsense mediated decay		F5H267	-	-
ENST00000539797.1	LAMTOR1-007	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541403.1	LAMTOR1-005	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,179 bps, Translation length: 161 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6IAA8

CCDS

This transcript is a member of the Human CCDS set: CCDS8209

Version

ENST00000278671.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000396733 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000278671.5 LAMTOR1-001

Summary