Transcript: ENST00000382096.1 VLDLR-005

Description

very low density lipoprotein receptor [Source:HGNC Symbol;Acc:12698]

Gene Synonyms

CARMQ1, CHRMQ1, VLDLRCH

Location

About this transcript

This transcript has 4 exons, is annotated with 30 domains and features, is associated with 11460 variant alleles and maps to 210 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382100.3	VLDLR-001	9163	873aa	ENSP00000371532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6446	P98155	NM_003383.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382099.2	VLDLR-002	3240	845aa	ENSP00000371531.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34979	A8K0G2 P98155 Q5VVF5	NM_001018056.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382096.1	VLDLR-005	736	173aa	ENSP00000371528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VVF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478776.1	VLDLR-004	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 736 bps, Translation length: 173 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000382096.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051523 (version 1)