Transcript: ENST00000396591.3 SLC30A5-001

Description

solute carrier family 30 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:19089]

Gene Synonyms

FLJ12496, FLJ12756, MGC5499, ZNT5, ZNTL1, ZTL1, ZnT-5

Location

Chromosome 5: 68,389,473-68,426,896 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 27 domains and features, is associated with 15818 variant alleles and maps to 884 oligo probes.

Gene

This transcript is a product of gene ENSG00000145740.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396591.3	SLC30A5-001	4360	765aa	ENSP00000379836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3996	Q8TAD4 Q9BTR6 Q9BY48 Q9H9X0	NM_022902.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380860.4	SLC30A5-002	1317	118aa	ENSP00000370241.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34173	Q8TAD4	NM_024055.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511158.1	SLC30A5-008	763	84aa	ENSP00000423078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000502979.1	SLC30A5-003	681	77aa	ENSP00000421251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58955	Q8TAD4	NM_001251969.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504103.1	SLC30A5-005	382	71aa	ENSP00000426751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513937.1	SLC30A5-007	555	65aa	ENSP00000427111.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507354.1	SLC30A5-004	2310	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512367.1	SLC30A5-006	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,360 bps, Translation length: 765 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAD4

CCDS

This transcript is a member of the Human CCDS set: CCDS3996

Version

ENST00000396591.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254017 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000396591.3 SLC30A5-001

Summary