Transcript: ENST00000274071.2 PDGFC-002

Description

platelet derived growth factor C [Source:HGNC Symbol;Acc:8801]

Gene Synonyms

FALLOTEIN, SCDGF, fallotein

Location

Chromosome 4: 157,682,766-157,892,467 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 2 domains and features, is associated with 92705 variant alleles and maps to 649 oligo probes.

Gene

This transcript is a product of gene ENSG00000145431.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000502773.1	PDGFC-001	4165	345aa	ENSP00000422464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3795	Q9NRA1	NM_016205.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541126.1	PDGFC-201	1354	182aa	ENSP00000442943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NRA1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542208.1	PDGFC-202	1014	190aa	ENSP00000439728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E3A5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422544.2	PDGFC-009	849	282aa	ENSP00000410048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NRA1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000274071.2	PDGFC-002	2987	50aa	ENSP00000274071.2	Nonsense mediated decay		J3KN71	-	-
ENST00000506880.1	PDGFC-003	1014	53aa	ENSP00000424600.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504672.1	PDGFC-007	786	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511985.1	PDGFC-008	725	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513664.1	PDGFC-004	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510982.1	PDGFC-006	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512711.1	PDGFC-005	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 2,987 bps, Translation length: 50 residues

Version

ENST00000274071.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366124 (version 1)

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Transcript: ENST00000274071.2 PDGFC-002

Summary