Transcript: ENST00000480101.1 TRPC1-005

Description

transient receptor potential cation channel, subfamily C, member 1 [Source:HGNC Symbol;Acc:12333]

Gene Synonyms

HTRP-1, TRP1

Location

About this transcript

This transcript has 2 exons, is associated with 1561 variant alleles and maps to 88 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000476941.1	TRPC1-002	3061	793aa	ENSP00000419313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58856	P48995	NM_001251845.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273482.6	TRPC1-001	4324	759aa	ENSP00000273482.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3126	P48995	NM_003304.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460401.1	TRPC1-004	397	65aa	ENSP00000418708.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480101.1	TRPC1-005	674	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 674 bps,

Version

ENST00000480101.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354523 (version 1)