Transcript: ENST00000469122.1 RAB5A-011

Description

RAB5A, member RAS oncogene family [Source:HGNC Symbol;Acc:9783]

Gene Synonyms

RAB5

Location

Chromosome 3: 19,992,493-20,020,383 forward strand.

About this transcript

This transcript has 4 exons, is associated with 13849 variant alleles and maps to 316 oligo probes.

Gene

This transcript is a product of gene ENSG00000144566.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273047.4	RAB5A-001	2536	215aa	ENSP00000273047.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2633	P20339	NM_004162.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422242.1	RAB5A-003	1443	201aa	ENSP00000411941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJA5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443878.1	RAB5A-005	753	15aa	ENSP00000398450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446547.1	RAB5A-002	1358	65aa	ENSP00000396632.1	Nonsense mediated decay		F8WD79	-	-
ENST00000412966.1	RAB5A-008	622	62aa	ENSP00000403533.1	Nonsense mediated decay		F8WCY6	-	-
ENST00000469122.1	RAB5A-011	918	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473608.1	RAB5A-010	868	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476544.1	RAB5A-007	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 918 bps,

Version

ENST00000469122.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339830 (version 1)

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Transcript: ENST00000469122.1 RAB5A-011

Summary