Transcript: ENST00000391857.4 RPL13A-001

Description

ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]

Gene Synonyms

L13A, RNU32, RNU33, RNU34, RNU35, RNU35A, RPL13A, TSTA1, U32, U32A, U33, U34, U35

Location

Chromosome 19: 49,990,811-49,995,565 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 3464 variant alleles and maps to 736 oligo probes.

Gene

This transcript is a product of gene ENSG00000142541.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000391857.4	RPL13A-001	1181	203aa	ENSP00000375730.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12768	P40429 Q8J015 Q9BSQ6	NM_012423.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467825.2	RPL13A-009	660	210aa	ENSP00000470037.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484279.1	RPL13A-004	794	46aa	ENSP00000470768.1	Nonsense mediated decay		M0QZU1	-	-
ENST00000477613.2	RPL13A-008	796	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488946.1	RPL13A-002	2312	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476268.2	RPL13A-003	1623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479992.1	RPL13A-006	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472481.1	RPL13A-007	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486930.1	RPL13A-005	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476300.1	RPL13A-012	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474171.1	RPL13A-010	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468655.1	RPL13A-011	407	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,181 bps, Translation length: 203 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P40429

CCDS

This transcript is a member of the Human CCDS set: CCDS12768

Version

ENST00000391857.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000258989 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000391857.4 RPL13A-001

Summary