Transcript: ENST00000336915.6 SKAP1-001

Description

src kinase associated phosphoprotein 1 [Source:HGNC Symbol;Acc:15605]

Gene Synonyms

HEL-S-81p, SCAP1, SKAP55

Location

Chromosome 17: 46,210,802-46,507,552 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 109756 variant alleles and maps to 517 oligo probes.

Gene

This transcript is a product of gene ENSG00000141293.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336915.6	SKAP1-001	1534	359aa	ENSP00000338171.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32674	J3QRG3 J3QS38 Q86WV1	NM_003726.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584924.1	SKAP1-002	1477	359aa	ENSP00000464311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32674	J3QRG3 J3QS38 Q86WV1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579336.1	SKAP1-005	678	99aa	ENSP00000464198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRG3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584709.1	SKAP1-003	1687	103aa	ENSP00000463284.1	Nonsense mediated decay		J3QKX8	-	-
ENST00000581400.2	SKAP1-006	783	92aa	ENSP00000462360.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581419.1	SKAP1-004	696	38aa	ENSP00000462437.1	Nonsense mediated decay		J3KSD4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583844.1	SKAP1-008	563	32aa	ENSP00000464509.1	Nonsense mediated decay		J3QS38	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579476.1	SKAP1-007	682	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,534 bps, Translation length: 359 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86WV1

CCDS

This transcript is a member of the Human CCDS set: CCDS32674

Version

ENST00000336915.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000443432 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000336915.6 SKAP1-001

Summary