Transcript: ENST00000389797.3 LRCH1-004

Description

leucine-rich repeats and calponin homology (CH) domain containing 1 [Source:HGNC Symbol;Acc:20309]

Gene Synonyms

CHDC1, KIAA1016, NP81

Location

Chromosome 13: 47,127,395-47,316,868 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 31 domains and features, is associated with 76032 variant alleles and maps to 563 oligo probes.

Gene

This transcript is a product of gene ENSG00000136141.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389797.3	LRCH1-004	3314	763aa	ENSP00000374447.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53865	C9J5B8 C9JWE0 Q9Y2L9	NM_001164211.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000311191.6	LRCH1-002	4710	696aa	ENSP00000308493.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53866	C9J5B8 C9JWE0 Q9Y2L9	NM_001164213.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389798.3	LRCH1-001	4131	728aa	ENSP00000374448.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31972	C9J5B8 C9JWE0 Q9Y2L9	NM_015116.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463929.1	LRCH1-005	554	98aa	ENSP00000417121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5B8 C9JWE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478412.1	LRCH1-006	545	72aa	ENSP00000419256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443945.2	LRCH1-003	2070	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,314 bps, Translation length: 763 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2L9

CCDS

This transcript is a member of the Human CCDS set: CCDS53865

Version

ENST00000389797.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000354618 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000389797.3 LRCH1-004

Summary