Transcript: ENST00000541852.1 ITM2C-010

Description

integral membrane protein 2C [Source:HGNC Symbol;Acc:6175]

Gene Synonyms

BRI3, BRICD2C, E25, E25C, ITM3, hRPC.1050_D_4

Location

Chromosome 2: 231,729,369-231,741,682 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 6238 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSG00000135916.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326427.6	ITM2C-001	2078	267aa	ENSP00000322730.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2479	B8ZZM6 C9JG41 E7EUS6 F5H4I5 Q9NQX7	NM_030926.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335005.6	ITM2C-002	1889	220aa	ENSP00000335121.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33396	Q9NQX7	NM_001012514.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326407.6	ITM2C-006	1888	230aa	ENSP00000322100.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33395	Q9NQX7	NM_001012516.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409704.2	ITM2C-008	1106	205aa	ENSP00000387242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZM6 E7EUS6 F5H4I5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457215.1	ITM2C-004	763	180aa	ENSP00000390655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG41	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543957.1	ITM2C-007	573	122aa	ENSP00000444899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4I5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541852.1	ITM2C-010	572	125aa	ENSP00000440295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUS6 F5H4I5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418408.2	ITM2C-009	563	125aa	ENSP00000403257.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUS6 F5H4I5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492029.1	ITM2C-005	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 572 bps, Translation length: 125 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000541852.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397047 (version 1)

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Transcript: ENST00000541852.1 ITM2C-010

Summary