Transcript: ENST00000555288.1 RAX-003

Description

retina and anterior neural fold homeobox [Source:HGNC Symbol;Acc:18662]

Gene Synonyms

MCOP3, RX

Location

About this transcript

This transcript has 2 exons, is associated with 726 variant alleles and maps to 98 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334889.3	RAX-001	3197	346aa	ENSP00000334813.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11972	G3V2C8 Q9Y2V3	NM_013435.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000256852.7	RAX-002	2935	104aa	ENSP00000256852.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2C8 Q86V11	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555288.1	RAX-003	473	74aa	ENSP00000450583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2C8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591550.1	RAX-004	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 473 bps, Translation length: 74 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000555288.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411908 (version 1)