Transcript: ENST00000256689.5 SLC38A2-001

Description

solute carrier family 38, member 2 [Source:HGNC Symbol;Acc:13448]

Gene Synonyms

ATA2, KIAA1382, PRO1068, SAT2, SNAT2

Location

Chromosome 12: 46,751,972-46,766,650 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 17 domains and features, is associated with 7351 variant alleles and maps to 674 oligo probes.

Gene

This transcript is a product of gene ENSG00000134294.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256689.5	SLC38A2-001	4888	506aa	ENSP00000256689.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8749	Q96QD8	NM_018976.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551374.1	SLC38A2-003	2802	344aa	ENSP00000450406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549258.1	SLC38A2-002	4384	88aa	ENSP00000449695.1	Nonsense mediated decay		F8VUY8	-	-
ENST00000547252.1	SLC38A2-006	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548111.1	SLC38A2-012	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548870.1	SLC38A2-007	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551405.1	SLC38A2-005	526	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548236.1	SLC38A2-008	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553252.1	SLC38A2-004	846	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546520.1	SLC38A2-010	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548785.1	SLC38A2-011	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552414.1	SLC38A2-009	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552703.1	SLC38A2-013	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 4,888 bps, Translation length: 506 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96QD8

CCDS

This transcript is a member of the Human CCDS set: CCDS8749

Version

ENST00000256689.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404226 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000256689.5 SLC38A2-001

Summary