Transcript: ENST00000254301.9 LGALS3-001

Description

lectin, galactoside-binding, soluble, 3 [Source:HGNC Symbol;Acc:6563]

Gene Synonyms

CBP35, GAL3, GALBP, GALIG, L31, LGALS2, MAC-2, MAC2

Location

Chromosome 14: 55,595,762-55,612,121 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 6994 variant alleles and maps to 380 oligo probes.

Gene

This transcript is a product of gene ENSG00000131981.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254301.9	LGALS3-001	1146	250aa	ENSP00000254301.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41956	G3V407 P17931 Q86TY5 Q8IXB9	NM_002306.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554715.1	LGALS3-003	916	233aa	ENSP00000451381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3R6 G3V407 Q8IXB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553493.1	LGALS3-008	319	88aa	ENSP00000451526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V407	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553755.1	LGALS3-007	630	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556322.1	LGALS3-004	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556263.1	LGALS3-005	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556438.2	LGALS3-002	1729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,146 bps, Translation length: 250 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17931

CCDS

This transcript is a member of the Human CCDS set: CCDS41956

Version

ENST00000254301.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000411309 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000254301.9 LGALS3-001

Summary