Transcript: ENST00000415565.1 CAPN7-006

Description

calpain 7 [Source:HGNC Symbol;Acc:1484]

Gene Synonyms

CALPAIN7, PALBH, PalBH

Location

Chromosome 3: 15,269,457-15,282,102 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 5712 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000131375.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253693.2	CAPN7-001	4353	813aa	ENSP00000253693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2624	Q9Y6W3	NM_014296.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415565.1	CAPN7-006	742	248aa	ENSP00000399486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000457023.1	CAPN7-005	854	42aa	ENSP00000389786.1	Nonsense mediated decay		F8WDQ3	-	-
ENST00000443567.1	CAPN7-007	805	112aa	ENSP00000394708.1	Nonsense mediated decay		H7C0F1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000418994.1	CAPN7-004	781	36aa	ENSP00000415482.1	Nonsense mediated decay		F8WCZ1	-	-
ENST00000463417.1	CAPN7-003	2319	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472400.1	CAPN7-008	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 742 bps, Translation length: 248 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000415565.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000340724 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000415565.1 CAPN7-006

Summary