Transcript: ENST00000560371.1 TRAF3-001

Description

TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]

Gene Synonyms

CAP-1, CAP1, CD40bp, CRAF1, IIAE5, LAP1

Location

Chromosome 14: 103,243,813-103,377,837 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 22 domains and features, is associated with 61318 variant alleles and maps to 615 oligo probes.

Gene

This transcript is a product of gene ENSG00000131323.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000560371.1	TRAF3-001	7640	568aa	ENSP00000454207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9975	H0YMI8 Q13114	NM_145725.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347662.4	TRAF3-201	2492	543aa	ENSP00000328003.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9976	A6NHG8 H0YMI8	NM_145726.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392745.2	TRAF3-005	2459	568aa	ENSP00000376500.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9975	H0YMI8 Q13114	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000351691.5	TRAF3-004	2239	543aa	ENSP00000332468.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9976	A6NHG8 H0YMI8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539721.1	TRAF3-002	1786	485aa	ENSP00000445998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55946	H0YMI8 Q13114	NM_001199427.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559734.1	TRAF3-008	870	290aa	ENSP00000453032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL26	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000560463.1	TRAF3-006	701	94aa	ENSP00000453623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558700.1	TRAF3-007	738	207aa	ENSP00000453031.1	Nonsense mediated decay		H0YL25	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558880.1	TRAF3-009	374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 7,640 bps, Translation length: 568 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13114

CCDS

This transcript is a member of the Human CCDS set: CCDS9975

Version

ENST00000560371.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000415735 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000560371.1 TRAF3-001

Summary