Transcript: ENST00000481949.2 SLC17A3-004

Description

solute carrier family 17 (organic anion transporter), member 3 [Source:HGNC Symbol;Acc:10931]

Gene Synonyms

NPT4

Location

Chromosome 6: 25,833,294-25,850,105 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 6606 variant alleles and maps to 200 oligo probes.

Gene

This transcript is a product of gene ENSG00000124564.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397060.4	SLC17A3-002	2052	498aa	ENSP00000380250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47385	H0Y9F7 O00476	NM_001098486.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360657.3	SLC17A3-001	1750	420aa	ENSP00000353873.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4566	H0Y9F7 O00476	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361703.6	SLC17A3-003	1543	420aa	ENSP00000355307.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4566	H0Y9F7 O00476	NM_006632.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505420.1	SLC17A3-009	661	51aa	ENSP00000424027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9F7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481949.2	SLC17A3-004	599	99aa	ENSP00000421855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9F7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506105.1	SLC17A3-006	1362	112aa	ENSP00000424729.1	Nonsense mediated decay		E9PBQ8	-	-
ENST00000449356.2	SLC17A3-010	563	112aa	ENSP00000415622.2	Nonsense mediated decay		E9PBQ8	-	-
ENST00000509714.1	SLC17A3-008	1549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503922.1	SLC17A3-005	1145	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000308453.5	SLC17A3-007	1138	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 599 bps, Translation length: 99 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000481949.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040073 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000481949.2 SLC17A3-004

Summary