Transcript: ENST00000397060.4 SLC17A3-002

Description

solute carrier family 17 (organic anion transporter), member 3 [Source:HGNC Symbol;Acc:10931]

Gene Synonyms

NPT4

Location

Chromosome 6: 25,845,084-25,874,471 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features, is associated with 11786 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000124564.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397060.4	SLC17A3-002	2052	498aa	ENSP00000380250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47385	H0Y9F7 O00476	NM_001098486.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360657.3	SLC17A3-001	1750	420aa	ENSP00000353873.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4566	H0Y9F7 O00476	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361703.6	SLC17A3-003	1543	420aa	ENSP00000355307.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4566	H0Y9F7 O00476	NM_006632.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505420.1	SLC17A3-009	661	51aa	ENSP00000424027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9F7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481949.2	SLC17A3-004	599	99aa	ENSP00000421855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9F7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506105.1	SLC17A3-006	1362	112aa	ENSP00000424729.1	Nonsense mediated decay		E9PBQ8	-	-
ENST00000449356.2	SLC17A3-010	563	112aa	ENSP00000415622.2	Nonsense mediated decay		E9PBQ8	-	-
ENST00000509714.1	SLC17A3-008	1549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503922.1	SLC17A3-005	1145	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000308453.5	SLC17A3-007	1138	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 2,052 bps, Translation length: 498 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00476

CCDS

This transcript is a member of the Human CCDS set: CCDS47385

Version

ENST00000397060.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040071 (version 5)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000397060.4 SLC17A3-002

Summary