Transcript: ENST00000368885.3 AMD1-003

Description

adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457]

Gene Synonyms

ADOMETDC, AMD, SAMDC

Location

Chromosome 6: 111,195,973-111,216,916 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 9944 variant alleles and maps to 721 oligo probes.

Gene

This transcript is a product of gene ENSG00000123505.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368885.3	AMD1-003	3438	334aa	ENSP00000357880.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5086	P17707 Q5VXN5	NM_001634.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368882.3	AMD1-001	3121	186aa	ENSP00000357877.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34512	P17707	NM_001033059.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368876.1	AMD1-002	3040	265aa	ENSP00000357870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VXN5	NM_001287214.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368877.5	AMD1-201	1605	305aa	ENSP00000357871.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NNH3 Q5VXN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451850.2	AMD1-202	1181	214aa	ENSP00000389988.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ60	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465404.2	AMD1-004	782	5aa	ENSP00000433396.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,438 bps, Translation length: 334 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17707

CCDS

This transcript is a member of the Human CCDS set: CCDS5086

Version

ENST00000368885.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041816 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000368885.3 AMD1-003

Summary