Transcript: ENST00000506156.1 FAM117A-009

Description

family with sequence similarity 117, member A [Source:HGNC Symbol;Acc:24179]

Location

Chromosome 17: 47,795,019-47,841,493 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 17948 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000121104.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240364.2	FAM117A-001	2365	453aa	ENSP00000240364.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11553	B7Z7Q3 Q9C073	NM_030802.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513602.1	FAM117A-002	1522	181aa	ENSP00000465808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z7Q3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511743.1	FAM117A-012	789	230aa	ENSP00000427326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RJ87	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506156.1	FAM117A-009	714	223aa	ENSP00000421412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFX7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503573.1	FAM117A-013	776	55aa	ENSP00000467070.1	Nonsense mediated decay		K7ENS5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514018.1	FAM117A-005	1128	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505159.1	FAM117A-003	739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515240.1	FAM117A-010	624	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503855.1	FAM117A-006	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509347.1	FAM117A-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503720.1	FAM117A-007	528	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514841.1	FAM117A-011	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 714 bps, Translation length: 223 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000506156.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000365744 (version 1)

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Transcript: ENST00000506156.1 FAM117A-009

Summary