Transcript: ENST00000399275.2 SMAD9-002

Description

SMAD family member 9 [Source:HGNC Symbol;Acc:6774]

Gene Synonyms

MADH6, MADH9, PPH2, SMAD8, SMAD8A, SMAD8B

Location

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 15690 variant alleles and maps to 518 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379826.4	SMAD9-201	5592	467aa	ENSP00000369154.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45032	O15198	NM_001127217.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350148.5	SMAD9-001	5447	430aa	ENSP00000239885.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9360	O15198	NM_005905.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399275.2	SMAD9-002	5389	467aa	ENSP00000382216.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45032	O15198	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483941.1	SMAD9-003	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,389 bps, Translation length: 467 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15198

CCDS

This transcript is a member of the Human CCDS set: CCDS45032

Version

ENST00000399275.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044525 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.