Transcript: ENST00000340413.2 NUP43-004

Description

nucleoporin 43kDa [Source:HGNC Symbol;Acc:21182]

Gene Synonyms

FLJ13287, bA350J20.1, p42

Location

Chromosome 6: 150,045,451-150,067,708 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 15 domains and features, is associated with 10326 variant alleles and maps to 543 oligo probes.

Gene

This transcript is a product of gene ENSG00000120253.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340413.2	NUP43-004	3874	380aa	ENSP00000342262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5218	A0PJK4 Q8NFH3	NM_198887.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367403.3	NUP43-201	3836	248aa	ENSP00000356373.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DVD1 Q5VYB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460354.2	NUP43-202	2186	380aa	ENSP00000432401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5218	A0PJK4 Q8NFH3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367404.4	NUP43-007	1089	284aa	ENSP00000356374.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2F0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543637.1	NUP43-008	576	178aa	ENSP00000438031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0E3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000403890.3	NUP43-005	1012	117aa	ENSP00000385078.3	Nonsense mediated decay		B4E301	-	-
ENST00000367402.2	NUP43-002	882	187aa	ENSP00000356372.2	Nonsense mediated decay		B4DVD1	-	-
ENST00000463048.3	NUP43-003	523	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,874 bps, Translation length: 380 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NFH3

CCDS

This transcript is a member of the Human CCDS set: CCDS5218

Version

ENST00000340413.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000396947 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000340413.2 NUP43-004

Summary